Stats for family Pelomedusidae

Stats for total mtDNA (group size: 2 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Pelusios castaneus 40.4 59.6 4730 2048 4557 5426 41.0
Pelomedusa subrufa 38.7 61.3 4466 2031 4597 5693 20.1
Stats for total protein-coding genes (group size: 2 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Pelusios castaneus 41.3 58.7 3433 1228 3076 3540 41.0
Pelomedusa subrufa 39.5 60.5 3260 1230 3144 3733 20.1
Stats for D-loop (group size: 2 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Pelusios castaneus 33.3 66.7 270 123 419 368 41.0
Pelomedusa subrufa 27.3 72.7 223 103 416 452 20.1
Stats for total tRNA-coding genes (group size: 2 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Pelusios castaneus 38.7 61.3 354 236 415 519 41.0
Pelomedusa subrufa 38.2 61.8 340 243 418 525 20.1
Stats for total rRNA-coding genes (group size: 2 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Pelusios castaneus 40.8 59.2 600 449 594 925 41.0
Pelomedusa subrufa 40.9 59.1 608 445 581 938 20.1
Stats for ATP6 (group size: 2 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Pelusios castaneus 40.6 59.4 225 55 189 221 41.0
Pelomedusa subrufa 37.1 62.9 204 51 207 225 20.1
Stats for ATP8 (group size: 2 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Pelusios castaneus 36.4 63.6 54 6 43 62 41.0
Pelomedusa subrufa 31.0 69.0 46 6 52 64 20.1
Stats for COX1 (group size: 2 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Pelusios castaneus 41.7 58.3 427 218 456 444 41.0
Pelomedusa subrufa 41.0 59.0 406 227 449 463 20.1
Stats for COX2 (group size: 2 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Pelusios castaneus 40.6 59.4 202 77 177 232 41.0
Pelomedusa subrufa 37.5 62.5 176 82 188 242 20.1
Stats for COX3 (group size: 2 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Pelusios castaneus 42.3 57.7 233 99 221 232 41.0
Pelomedusa subrufa 40.1 59.9 215 99 229 241 20.1
Stats for CYTB (group size: 2 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Pelusios castaneus 45.6 54.4 375 127 298 301 41.0
Pelomedusa subrufa 43.2 56.8 364 130 302 347 20.1
Stats for ND1 (group size: 2 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Pelusios castaneus 41.0 59.0 285 114 298 275 41.0
Pelomedusa subrufa 39.5 60.5 270 112 298 288 20.1
Stats for ND2 (group size: 2 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Pelusios castaneus 40.1 59.9 321 98 270 355 41.0
Pelomedusa subrufa 38.3 61.7 294 104 284 358 20.1
Stats for ND3 (group size: 2 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Pelusios castaneus 43.3 56.7 101 31 80 93 41.0
Pelomedusa subrufa 34.4 65.6 88 33 106 125 20.1
Stats for ND4 (group size: 2 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Pelusios castaneus 39.6 60.4 414 135 389 448 41.0
Pelomedusa subrufa 39.0 61.0 405 132 383 458 20.1
Stats for ND4L (group size: 2 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Pelusios castaneus 40.5 59.5 85 36 88 90 41.0
Pelomedusa subrufa 39.5 60.5 90 28 87 94 20.1
Stats for ND5 (group size: 2 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Pelusios castaneus 39.7 60.3 534 188 500 596 41.0
Pelomedusa subrufa 39.4 60.6 528 188 488 614 20.1
Stats for ND6 (group size: 2 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Pelusios castaneus 44.6 55.4 179 46 75 204 41.0
Pelomedusa subrufa 41.4 58.6 176 40 79 227 20.1
Stats for 12S rRNA gene (group size: 2 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Pelusios castaneus 43.5 56.5 240 182 211 338 41.0
Pelomedusa subrufa 42.5 57.5 238 173 217 340 20.1
Stats for 16S rRNA gene (group size: 2 species)
Species GC (%) AT (%) G (bases) C (bases) A (bases) T (bases) Maximum lifespan (yrs)
Pelusios castaneus 39.3 60.7 360 267 383 587 41.0
Pelomedusa subrufa 40.0 60.0 370 272 364 598 20.1

Contact: Vadim E. Fraifeld, MD, PhD

Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel

Email:
How to cite us:

If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.