Stats for family Emydidae
Species in family:
| Stats for total mtDNA (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Chrysemys picta | 38.8 | 61.2 | 4376 | 2165 | 4515 | 5810 | 61.0 |
| Trachemys scripta | 38.7 | 61.3 | 4350 | 2161 | 4537 | 5762 | 41.3 |
| Stats for total protein-coding genes (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Chrysemys picta | 39.7 | 60.3 | 3185 | 1324 | 3048 | 3808 | 61.0 |
| Trachemys scripta | 39.1 | 60.9 | 3135 | 1320 | 3118 | 3808 | 41.3 |
| Stats for D-loop (group size: 0 species) | |||||||
|---|---|---|---|---|---|---|---|
| There is no data for D-loop in this group. |
| Stats for total tRNA-coding genes (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Chrysemys picta | 37.7 | 62.3 | 340 | 243 | 426 | 539 | 61.0 |
| Trachemys scripta | 38.1 | 61.9 | 349 | 242 | 420 | 541 | 41.3 |
| Stats for total rRNA-coding genes (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Chrysemys picta | 39.5 | 60.5 | 590 | 430 | 552 | 1011 | 61.0 |
| Trachemys scripta | 39.6 | 60.4 | 593 | 433 | 566 | 997 | 41.3 |
| Stats for ATP6 (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Chrysemys picta | 40.8 | 59.2 | 206 | 73 | 181 | 224 | 61.0 |
| Trachemys scripta | 38.2 | 61.8 | 191 | 70 | 196 | 227 | 41.3 |
| Stats for ATP8 (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Chrysemys picta | 33.9 | 66.1 | 53 | 11 | 50 | 75 | 61.0 |
| Trachemys scripta | 32.8 | 67.2 | 50 | 12 | 54 | 73 | 41.3 |
| Stats for COX1 (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Chrysemys picta | 40.8 | 59.2 | 379 | 253 | 458 | 458 | 61.0 |
| Trachemys scripta | 41.2 | 58.8 | 376 | 261 | 461 | 447 | 41.3 |
| Stats for COX2 (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Chrysemys picta | 38.7 | 61.3 | 175 | 91 | 182 | 239 | 61.0 |
| Trachemys scripta | 37.3 | 62.7 | 168 | 88 | 191 | 240 | 41.3 |
| Stats for COX3 (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Chrysemys picta | 41.8 | 58.2 | 211 | 117 | 221 | 235 | 61.0 |
| Trachemys scripta | 42.2 | 57.8 | 216 | 115 | 214 | 239 | 41.3 |
| Stats for CYTB (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Chrysemys picta | 41.9 | 58.1 | 350 | 128 | 309 | 353 | 61.0 |
| Trachemys scripta | 40.7 | 59.3 | 335 | 129 | 321 | 355 | 41.3 |
| Stats for ND1 (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Chrysemys picta | 38.4 | 61.6 | 271 | 102 | 280 | 318 | 61.0 |
| Trachemys scripta | 39.2 | 60.8 | 274 | 107 | 282 | 308 | 41.3 |
| Stats for ND2 (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Chrysemys picta | 38.1 | 61.9 | 314 | 82 | 248 | 395 | 61.0 |
| Trachemys scripta | 37.0 | 63.0 | 299 | 85 | 266 | 389 | 41.3 |
| Stats for ND3 (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Chrysemys picta | 38.9 | 61.1 | 91 | 45 | 105 | 109 | 61.0 |
| Trachemys scripta | 39.4 | 60.6 | 96 | 42 | 100 | 112 | 41.3 |
| Stats for ND4 (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Chrysemys picta | 39.4 | 60.6 | 399 | 145 | 356 | 481 | 61.0 |
| Trachemys scripta | 38.3 | 61.7 | 390 | 139 | 366 | 486 | 41.3 |
| Stats for ND4L (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Chrysemys picta | 37.7 | 62.3 | 81 | 31 | 93 | 92 | 61.0 |
| Trachemys scripta | 40.3 | 59.7 | 87 | 33 | 90 | 88 | 41.3 |
| Stats for ND5 (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Chrysemys picta | 38.7 | 61.3 | 493 | 207 | 502 | 607 | 61.0 |
| Trachemys scripta | 38.1 | 61.9 | 495 | 201 | 513 | 618 | 41.3 |
| Stats for ND6 (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Chrysemys picta | 40.8 | 59.2 | 171 | 43 | 74 | 237 | 61.0 |
| Trachemys scripta | 39.4 | 60.6 | 165 | 42 | 77 | 241 | 41.3 |
| Stats for 12S rRNA gene (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Chrysemys picta | 41.0 | 59.0 | 232 | 165 | 206 | 366 | 61.0 |
| Trachemys scripta | 41.8 | 58.2 | 236 | 169 | 207 | 357 | 41.3 |
| Stats for 16S rRNA gene (group size: 2 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Chrysemys picta | 38.6 | 61.4 | 358 | 265 | 346 | 645 | 61.0 |
| Trachemys scripta | 38.3 | 61.7 | 357 | 264 | 359 | 640 | 41.3 |
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
- How to cite us:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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