Stats for family Icteridae
Species in family:
| Stats for total mtDNA (group size: 3 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Euphagus cyanocephalus | 45.9 | 54.1 | 5327 | 2375 | 3943 | 5120 | 12.5 |
| Quiscalus quiscula | 46.3 | 53.7 | 5377 | 2381 | 3919 | 5091 | 23.1 |
| Agelaius phoeniceus | 45.9 | 54.1 | 5330 | 2371 | 3983 | 5091 | 20.0 |
| Stats for total protein-coding genes (group size: 3 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Euphagus cyanocephalus | 47.0 | 53.0 | 3911 | 1435 | 2653 | 3379 | 12.5 |
| Quiscalus quiscula | 47.3 | 52.7 | 3940 | 1444 | 2645 | 3349 | 23.1 |
| Agelaius phoeniceus | 46.9 | 53.1 | 3897 | 1438 | 2691 | 3352 | 20.0 |
| Stats for D-loop (group size: 0 species) | |||||||
|---|---|---|---|---|---|---|---|
| There is no data for D-loop in this group. |
| Stats for total tRNA-coding genes (group size: 3 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Euphagus cyanocephalus | 41.4 | 58.6 | 369 | 268 | 395 | 505 | 12.5 |
| Quiscalus quiscula | 42.1 | 57.9 | 379 | 268 | 387 | 504 | 23.1 |
| Agelaius phoeniceus | 41.8 | 58.2 | 376 | 267 | 392 | 503 | 20.0 |
| Stats for total rRNA-coding genes (group size: 3 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Euphagus cyanocephalus | 45.7 | 54.3 | 663 | 515 | 543 | 854 | 12.5 |
| Quiscalus quiscula | 46.0 | 54.0 | 669 | 514 | 536 | 853 | 23.1 |
| Agelaius phoeniceus | 45.9 | 54.1 | 665 | 515 | 537 | 855 | 20.0 |
| Stats for ATP6 (group size: 3 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Euphagus cyanocephalus | 45.6 | 54.4 | 244 | 68 | 164 | 208 | 12.5 |
| Quiscalus quiscula | 48.2 | 51.8 | 257 | 73 | 155 | 199 | 23.1 |
| Agelaius phoeniceus | 46.1 | 53.9 | 240 | 75 | 171 | 198 | 20.0 |
| Stats for ATP8 (group size: 3 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Euphagus cyanocephalus | 45.8 | 54.2 | 65 | 12 | 40 | 51 | 12.5 |
| Quiscalus quiscula | 45.2 | 54.8 | 64 | 12 | 41 | 51 | 23.1 |
| Agelaius phoeniceus | 45.2 | 54.8 | 62 | 14 | 46 | 46 | 20.0 |
| Stats for COX1 (group size: 3 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Euphagus cyanocephalus | 48.3 | 51.7 | 487 | 262 | 367 | 435 | 12.5 |
| Quiscalus quiscula | 48.0 | 52.0 | 489 | 256 | 367 | 439 | 23.1 |
| Agelaius phoeniceus | 46.6 | 53.4 | 469 | 253 | 388 | 441 | 20.0 |
| Stats for COX2 (group size: 3 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Euphagus cyanocephalus | 47.2 | 52.8 | 222 | 101 | 155 | 206 | 12.5 |
| Quiscalus quiscula | 47.5 | 52.5 | 227 | 98 | 151 | 208 | 23.1 |
| Agelaius phoeniceus | 48.4 | 51.6 | 230 | 101 | 149 | 204 | 20.0 |
| Stats for COX3 (group size: 3 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Euphagus cyanocephalus | 48.9 | 51.1 | 262 | 121 | 187 | 214 | 12.5 |
| Quiscalus quiscula | 48.5 | 51.5 | 262 | 118 | 189 | 215 | 23.1 |
| Agelaius phoeniceus | 48.1 | 51.9 | 259 | 118 | 192 | 215 | 20.0 |
| Stats for CYTB (group size: 3 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Euphagus cyanocephalus | 47.6 | 52.4 | 394 | 150 | 281 | 318 | 12.5 |
| Quiscalus quiscula | 47.4 | 52.6 | 393 | 149 | 277 | 324 | 23.1 |
| Agelaius phoeniceus | 46.8 | 53.2 | 385 | 150 | 291 | 317 | 20.0 |
| Stats for ND1 (group size: 3 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Euphagus cyanocephalus | 47.0 | 53.0 | 326 | 134 | 254 | 264 | 12.5 |
| Quiscalus quiscula | 48.7 | 51.3 | 326 | 150 | 258 | 244 | 23.1 |
| Agelaius phoeniceus | 46.6 | 53.4 | 319 | 137 | 264 | 258 | 20.0 |
| Stats for ND2 (group size: 3 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Euphagus cyanocephalus | 44.6 | 55.4 | 359 | 105 | 261 | 315 | 12.5 |
| Quiscalus quiscula | 44.9 | 55.1 | 362 | 105 | 264 | 309 | 23.1 |
| Agelaius phoeniceus | 45.9 | 54.1 | 369 | 108 | 252 | 311 | 20.0 |
| Stats for ND3 (group size: 3 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Euphagus cyanocephalus | 45.6 | 54.4 | 116 | 44 | 94 | 97 | 12.5 |
| Quiscalus quiscula | 47.6 | 52.4 | 122 | 45 | 90 | 94 | 23.1 |
| Agelaius phoeniceus | 46.7 | 53.3 | 121 | 43 | 87 | 100 | 20.0 |
| Stats for ND4 (group size: 3 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Euphagus cyanocephalus | 46.4 | 53.6 | 493 | 147 | 312 | 426 | 12.5 |
| Quiscalus quiscula | 47.1 | 52.9 | 498 | 151 | 310 | 419 | 23.1 |
| Agelaius phoeniceus | 46.8 | 53.2 | 494 | 151 | 315 | 418 | 20.0 |
| Stats for ND4L (group size: 3 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Euphagus cyanocephalus | 49.2 | 50.8 | 108 | 38 | 72 | 79 | 12.5 |
| Quiscalus quiscula | 47.8 | 52.2 | 105 | 37 | 73 | 82 | 23.1 |
| Agelaius phoeniceus | 48.8 | 51.2 | 109 | 36 | 72 | 80 | 20.0 |
| Stats for ND5 (group size: 3 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Euphagus cyanocephalus | 45.9 | 54.1 | 628 | 206 | 410 | 574 | 12.5 |
| Quiscalus quiscula | 45.8 | 54.2 | 629 | 204 | 411 | 574 | 23.1 |
| Agelaius phoeniceus | 46.0 | 54.0 | 632 | 205 | 408 | 573 | 20.0 |
| Stats for ND6 (group size: 3 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Euphagus cyanocephalus | 49.9 | 50.1 | 210 | 49 | 60 | 200 | 12.5 |
| Quiscalus quiscula | 49.5 | 50.5 | 209 | 48 | 63 | 199 | 23.1 |
| Agelaius phoeniceus | 50.1 | 49.9 | 211 | 49 | 60 | 199 | 20.0 |
| Stats for 12S rRNA gene (group size: 3 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Euphagus cyanocephalus | 48.8 | 51.2 | 275 | 202 | 196 | 304 | 12.5 |
| Quiscalus quiscula | 48.9 | 51.1 | 273 | 203 | 195 | 303 | 23.1 |
| Agelaius phoeniceus | 48.5 | 51.5 | 269 | 203 | 198 | 304 | 20.0 |
| Stats for 16S rRNA gene (group size: 3 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Euphagus cyanocephalus | 43.9 | 56.1 | 388 | 313 | 347 | 550 | 12.5 |
| Quiscalus quiscula | 44.2 | 55.8 | 396 | 311 | 341 | 550 | 23.1 |
| Agelaius phoeniceus | 44.3 | 55.7 | 396 | 312 | 339 | 551 | 20.0 |
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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