Stats for family Testudinidae
Species in family:
| Stats for total mtDNA (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 37.3 - 40.0% | 60.0 - 62.7% | 4418 - 5122 | 2034 - 2399 | 4256 - 5518 | 5612 - 6734 | 19.9 - 127.0 |
| Median | 38.4% | 61.7% | 4916 | 2217 | 5204 | 6572 | 25.9 |
| Average ± stdev | 38.4 ± 0.9% | 61.6 ± 0.9% | 4770 ± 272 | 2205 ± 113 | 4927 ± 484 | 6263 ± 397 | 41.3 ± 38.6 |
| Coefficient of variation | 0.02 | 0.02 | 0.06 | 0.05 | 0.10 | 0.06 | 0.93 |
| Pearson correlation coefficient with log10MLS |
-0.70 | 0.70 | 0.21 | 0.08 | 0.49 | 0.38 | - |
| Pearson p-value (two tailed) |
1.25E-01 | 1.25E-01 | 6.85E-01 | 8.87E-01 | 3.23E-01 | 4.51E-01 | - |
| Stats for total protein-coding genes (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 39.3 - 40.8% | 59.2 - 60.7% | 3173 - 3234 | 1227 - 1390 | 2963 - 3012 | 3758 - 3935 | 19.9 - 127.0 |
| Median | 39.7% | 60.6% | 3212 | 1320 | 2982 | 3876 | 25.9 |
| Average ± stdev | 39.7 ± 0.6% | 60.3 ± 0.6% | 3209 ± 20 | 1301 ± 52 | 2983 ± 20 | 3866 ± 56 | 41.3 ± 38.6 |
| Coefficient of variation | 0.01 | 0.01 | 0.01 | 0.04 | 0.01 | 0.01 | 0.93 |
| Pearson correlation coefficient with log10MLS |
-0.47 | 0.47 | -0.75 | -0.23 | 0.61 | 0.27 | - |
| Pearson p-value (two tailed) |
3.46E-01 | 3.46E-01 | 8.61E-02 | 6.58E-01 | 2.02E-01 | 6.07E-01 | - |
| Stats for D-loop (group size: 0 species) | |||||||
|---|---|---|---|---|---|---|---|
| There is no data for D-loop in this group. |
| Stats for total tRNA-coding genes (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 38.3 - 39.5% | 60.5 - 61.7% | 355 - 377 | 235 - 247 | 393 - 414 | 531 - 568 | 19.9 - 127.0 |
| Median | 39.0% | 61.1% | 362 | 243 | 406 | 547 | 25.9 |
| Average ± stdev | 38.9 ± 0.4% | 61.1 ± 0.4% | 362 ± 6 | 242 ± 4 | 404 ± 7 | 544 ± 12 | 41.3 ± 38.6 |
| Coefficient of variation | 0.01 | 0.01 | 0.02 | 0.02 | 0.02 | 0.02 | 0.93 |
| Pearson correlation coefficient with log10MLS |
0.35 | -0.35 | -0.05 | 0.08 | -0.35 | -0.22 | - |
| Pearson p-value (two tailed) |
4.98E-01 | 4.98E-01 | 9.18E-01 | 8.79E-01 | 5.02E-01 | 6.78E-01 | - |
| Stats for total rRNA-coding genes (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 38.9 - 40.9% | 59.1 - 61.1% | 580 - 620 | 415 - 436 | 535 - 569 | 975 - 1000 | 19.9 - 127.0 |
| Median | 39.9% | 60.2% | 611 | 421 | 549 | 1000 | 25.9 |
| Average ± stdev | 39.9 ± 0.7% | 60.1 ± 0.7% | 605 ± 13 | 422 ± 6 | 551 ± 10 | 994 ± 9 | 41.3 ± 38.6 |
| Coefficient of variation | 0.02 | 0.01 | 0.02 | 0.02 | 0.02 | 0.01 | 0.93 |
| Pearson correlation coefficient with log10MLS |
-0.80 | 0.80 | -0.86 | -0.23 | 0.80 | 0.36 | - |
| Pearson p-value (two tailed) |
5.70E-02 | 5.70E-02 | 2.86E-02 | 6.63E-01 | 5.56E-02 | 4.86E-01 | - |
| Stats for ATP6 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 36.3 - 40.7% | 59.3 - 63.7% | 188 - 203 | 57 - 74 | 183 - 196 | 221 - 243 | 19.9 - 127.0 |
| Median | 37.4% | 62.6% | 194 | 63 | 189 | 241 | 25.9 |
| Average ± stdev | 37.7 ± 1.5% | 62.3 ± 1.5% | 194 ± 4 | 63 ± 5 | 189 ± 4 | 236 ± 7 | 41.3 ± 38.6 |
| Coefficient of variation | 0.04 | 0.02 | 0.03 | 0.08 | 0.02 | 0.03 | 0.93 |
| Pearson correlation coefficient with log10MLS |
-0.27 | 0.27 | -0.34 | -0.13 | 0.12 | 0.28 | - |
| Pearson p-value (two tailed) |
6.10E-01 | 6.10E-01 | 5.16E-01 | 8.01E-01 | 8.14E-01 | 5.86E-01 | - |
| Stats for ATP8 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 35.1 - 38.5% | 61.5 - 64.9% | 49 - 58 | 8 - 12 | 35 - 43 | 66 - 79 | 19.9 - 127.0 |
| Median | 37.4% | 63.7% | 55 | 11 | 37 | 73 | 25.9 |
| Average ± stdev | 36.8 ± 1.3% | 63.2 ± 1.3% | 53 ± 3 | 10 ± 1 | 37 ± 2 | 72 ± 3 | 41.3 ± 38.6 |
| Coefficient of variation | 0.04 | 0.02 | 0.06 | 0.12 | 0.07 | 0.06 | 0.93 |
| Pearson correlation coefficient with log10MLS |
0.12 | -0.12 | 0.20 | -0.30 | -0.28 | 0.14 | - |
| Pearson p-value (two tailed) |
8.22E-01 | 8.22E-01 | 6.99E-01 | 5.58E-01 | 5.87E-01 | 7.89E-01 | - |
| Stats for COX1 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 41.0 - 41.9% | 58.1 - 59.0% | 380 - 403 | 236 - 267 | 437 - 460 | 439 - 469 | 19.9 - 127.0 |
| Median | 41.3% | 58.9% | 383 | 257 | 459 | 455 | 25.9 |
| Average ± stdev | 41.3 ± 0.4% | 58.7 ± 0.4% | 386 ± 7 | 252 ± 9 | 454 ± 8 | 454 ± 8 | 41.3 ± 38.6 |
| Coefficient of variation | 0.01 | 0.01 | 0.02 | 0.04 | 0.02 | 0.02 | 0.93 |
| Pearson correlation coefficient with log10MLS |
-0.58 | 0.58 | 0.11 | -0.40 | 0.06 | 0.29 | - |
| Pearson p-value (two tailed) |
2.23E-01 | 2.23E-01 | 8.31E-01 | 4.38E-01 | 9.05E-01 | 5.78E-01 | - |
| Stats for COX2 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 36.7 - 38.9% | 61.1 - 63.3% | 167 - 179 | 84 - 94 | 176 - 187 | 239 - 248 | 19.9 - 127.0 |
| Median | 38.4% | 61.7% | 175 | 92 | 182 | 242 | 25.9 |
| Average ± stdev | 38.2 ± 0.8% | 61.8 ± 0.8% | 173 ± 4 | 89 ± 3 | 181 ± 3 | 243 ± 3 | 41.3 ± 38.6 |
| Coefficient of variation | 0.02 | 0.01 | 0.03 | 0.04 | 0.02 | 0.01 | 0.93 |
| Pearson correlation coefficient with log10MLS |
-0.35 | 0.35 | -0.60 | 0.24 | 0.52 | -0.05 | - |
| Pearson p-value (two tailed) |
5.02E-01 | 5.02E-01 | 2.07E-01 | 6.47E-01 | 2.91E-01 | 9.24E-01 | - |
| Stats for COX3 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 41.6 - 44.1% | 55.9 - 58.4% | 206 - 220 | 111 - 127 | 204 - 214 | 229 - 249 | 19.9 - 127.0 |
| Median | 42.2% | 58.3% | 211 | 120 | 212 | 244 | 25.9 |
| Average ± stdev | 42.3 ± 1.0% | 57.7 ± 1.0% | 212 ± 5 | 119 ± 4 | 210 ± 3 | 242 ± 6 | 41.3 ± 38.6 |
| Coefficient of variation | 0.02 | 0.02 | 0.02 | 0.04 | 0.02 | 0.03 | 0.93 |
| Pearson correlation coefficient with log10MLS |
-0.15 | 0.15 | -0.37 | 0.19 | 0.23 | 0.04 | - |
| Pearson p-value (two tailed) |
7.82E-01 | 7.82E-01 | 4.68E-01 | 7.14E-01 | 6.55E-01 | 9.46E-01 | - |
| Stats for CYTB (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 41.2 - 42.3% | 57.7 - 58.8% | 341 - 357 | 119 - 137 | 295 - 309 | 351 - 375 | 19.9 - 127.0 |
| Median | 42.0% | 58.4% | 350 | 131 | 305 | 366 | 25.9 |
| Average ± stdev | 41.8 ± 0.5% | 58.2 ± 0.5% | 349 ± 5 | 130 ± 5 | 304 ± 4 | 363 ± 7 | 41.3 ± 38.6 |
| Coefficient of variation | 0.01 | 0.01 | 0.02 | 0.04 | 0.01 | 0.02 | 0.93 |
| Pearson correlation coefficient with log10MLS |
0.05 | -0.05 | -0.08 | -0.04 | -0.05 | -0.16 | - |
| Pearson p-value (two tailed) |
9.31E-01 | 9.31E-01 | 8.81E-01 | 9.38E-01 | 9.30E-01 | 7.63E-01 | - |
| Stats for ND1 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 39.0 - 41.4% | 58.6 - 61.0% | 274 - 288 | 102 - 123 | 258 - 275 | 298 - 322 | 19.9 - 127.0 |
| Median | 40.8% | 59.6% | 287 | 109 | 262 | 318 | 25.9 |
| Average ± stdev | 40.5 ± 0.8% | 59.5 ± 0.8% | 283 ± 5 | 109 ± 6 | 264 ± 6 | 314 ± 7 | 41.3 ± 38.6 |
| Coefficient of variation | 0.02 | 0.01 | 0.02 | 0.06 | 0.02 | 0.02 | 0.93 |
| Pearson correlation coefficient with log10MLS |
0.13 | -0.13 | 0.34 | -0.13 | -0.37 | 0.18 | - |
| Pearson p-value (two tailed) |
8.00E-01 | 8.00E-01 | 5.09E-01 | 8.08E-01 | 4.76E-01 | 7.37E-01 | - |
| Stats for ND2 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 38.0 - 39.8% | 60.2 - 62.0% | 301 - 322 | 86 - 98 | 243 - 266 | 374 - 394 | 19.9 - 127.0 |
| Median | 39.3% | 61.0% | 316 | 93 | 254 | 382 | 25.9 |
| Average ± stdev | 39.0 ± 0.7% | 61.0 ± 0.7% | 313 ± 7 | 92 ± 3 | 254 ± 7 | 381 ± 6 | 41.3 ± 38.6 |
| Coefficient of variation | 0.02 | 0.01 | 0.02 | 0.04 | 0.03 | 0.02 | 0.93 |
| Pearson correlation coefficient with log10MLS |
-0.01 | 0.01 | 0.03 | -0.06 | 0.06 | -0.06 | - |
| Pearson p-value (two tailed) |
9.91E-01 | 9.91E-01 | 9.61E-01 | 9.15E-01 | 9.13E-01 | 9.08E-01 | - |
| Stats for ND3 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 37.8 - 41.5% | 58.5 - 62.2% | 88 - 104 | 36 - 47 | 95 - 108 | 105 - 117 | 19.9 - 127.0 |
| Median | 39.8% | 60.8% | 101 | 45 | 107 | 109 | 25.9 |
| Average ± stdev | 39.5 ± 1.2% | 60.5 ± 1.2% | 95 ± 6 | 43 ± 4 | 103 ± 5 | 109 ± 3 | 41.3 ± 38.6 |
| Coefficient of variation | 0.03 | 0.02 | 0.07 | 0.10 | 0.05 | 0.04 | 0.93 |
| Pearson correlation coefficient with log10MLS |
-0.22 | 0.22 | -0.28 | 0.21 | 0.15 | 0.01 | - |
| Pearson p-value (two tailed) |
6.77E-01 | 6.77E-01 | 5.95E-01 | 6.85E-01 | 7.75E-01 | 9.88E-01 | - |
| Stats for ND4 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 35.8 - 40.0% | 60.0 - 64.2% | 361 - 395 | 133 - 156 | 349 - 384 | 478 - 500 | 19.9 - 127.0 |
| Median | 38.0% | 62.7% | 382 | 146 | 367 | 487 | 25.9 |
| Average ± stdev | 37.8 ± 1.4% | 62.2 ± 1.4% | 377 ± 11 | 143 ± 7 | 368 ± 11 | 488 ± 8 | 41.3 ± 38.6 |
| Coefficient of variation | 0.04 | 0.02 | 0.03 | 0.05 | 0.03 | 0.02 | 0.93 |
| Pearson correlation coefficient with log10MLS |
-0.75 | 0.75 | -0.66 | -0.78 | 0.63 | 0.69 | - |
| Pearson p-value (two tailed) |
8.42E-02 | 8.42E-02 | 1.53E-01 | 6.47E-02 | 1.79E-01 | 1.31E-01 | - |
| Stats for ND4L (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 39.1 - 41.4% | 58.6 - 60.9% | 85 - 90 | 29 - 34 | 87 - 91 | 85 - 90 | 19.9 - 127.0 |
| Median | 40.7% | 59.3% | 89 | 34 | 88 | 89 | 25.9 |
| Average ± stdev | 40.6 ± 0.9% | 59.4 ± 0.9% | 87 ± 1 | 32 ± 1 | 88 ± 1 | 88 ± 1 | 41.3 ± 38.6 |
| Coefficient of variation | 0.02 | 0.02 | 0.02 | 0.06 | 0.02 | 0.02 | 0.93 |
| Pearson correlation coefficient with log10MLS |
0.30 | -0.30 | 0.39 | 0.04 | 0.31 | -0.66 | - |
| Pearson p-value (two tailed) |
5.60E-01 | 5.60E-01 | 4.49E-01 | 9.33E-01 | 5.44E-01 | 1.54E-01 | - |
| Stats for ND5 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 38.6 - 39.7% | 60.3 - 61.4% | 514 - 535 | 164 - 188 | 456 - 467 | 622 - 645 | 19.9 - 127.0 |
| Median | 39.5% | 61.2% | 532 | 180 | 459 | 637 | 25.9 |
| Average ± stdev | 39.2 ± 0.5% | 60.8 ± 0.5% | 526 ± 7 | 177 ± 9 | 460 ± 3 | 632 ± 9 | 41.3 ± 38.6 |
| Coefficient of variation | 0.01 | 0.01 | 0.01 | 0.05 | 0.01 | 0.02 | 0.93 |
| Pearson correlation coefficient with log10MLS |
-0.75 | 0.75 | -0.59 | -0.14 | 0.78 | 0.41 | - |
| Pearson p-value (two tailed) |
8.37E-02 | 8.37E-02 | 2.16E-01 | 7.92E-01 | 6.64E-02 | 4.15E-01 | - |
| Stats for ND6 (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 37.1 - 39.6% | 60.4 - 62.9% | 151 - 166 | 34 - 47 | 68 - 78 | 241 - 258 | 19.9 - 127.0 |
| Median | 38.1% | 62.3% | 162 | 43 | 76 | 252 | 25.9 |
| Average ± stdev | 38.2 ± 1.0% | 61.8 ± 1.0% | 159 ± 4 | 41 ± 4 | 73 ± 3 | 251 ± 5 | 41.3 ± 38.6 |
| Coefficient of variation | 0.02 | 0.02 | 0.03 | 0.11 | 0.05 | 0.02 | 0.93 |
| Pearson correlation coefficient with log10MLS |
-0.45 | 0.45 | -0.01 | -0.46 | 0.21 | 0.25 | - |
| Pearson p-value (two tailed) |
3.68E-01 | 3.68E-01 | 9.78E-01 | 3.58E-01 | 6.83E-01 | 6.27E-01 | - |
| Stats for 12S rRNA gene (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 40.0 - 42.1% | 57.9 - 60.0% | 231 - 250 | 157 - 163 | 203 - 219 | 356 - 363 | 19.9 - 127.0 |
| Median | 42.0% | 58.3% | 246 | 161 | 207 | 359 | 25.9 |
| Average ± stdev | 41.5 ± 0.8% | 58.5 ± 0.8% | 242 ± 6 | 160 ± 2 | 208 ± 5 | 358 ± 2 | 41.3 ± 38.6 |
| Coefficient of variation | 0.02 | 0.01 | 0.03 | 0.01 | 0.03 | 0.01 | 0.93 |
| Pearson correlation coefficient with log10MLS |
-0.90 | 0.90 | -0.67 | -0.74 | 0.77 | 0.87 | - |
| Pearson p-value (two tailed) |
1.58E-02 | 1.58E-02 | 1.42E-01 | 9.05E-02 | 7.03E-02 | 2.38E-02 | - |
| Stats for 16S rRNA gene (group size: 6 species) | |||||||
|---|---|---|---|---|---|---|---|
| GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) | |
| Range (min-max) | 38.3 - 40.2% | 59.8 - 61.7% | 349 - 373 | 255 - 275 | 330 - 351 | 616 - 644 | 19.9 - 127.0 |
| Median | 38.7% | 61.3% | 363 | 261 | 346 | 640 | 25.9 |
| Average ± stdev | 39.0 ± 0.7% | 61.0 ± 0.7% | 363 ± 7 | 262 ± 6 | 342 ± 7 | 636 ± 9 | 41.3 ± 38.6 |
| Coefficient of variation | 0.02 | 0.01 | 0.02 | 0.02 | 0.02 | 0.01 | 0.93 |
| Pearson correlation coefficient with log10MLS |
-0.60 | 0.60 | -0.90 | 0.03 | 0.51 | 0.12 | - |
| Pearson p-value (two tailed) |
2.11E-01 | 2.11E-01 | 1.32E-02 | 9.50E-01 | 3.01E-01 | 8.17E-01 | - |
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
- How to cite us:
-
If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
-
Quick links:
- Terms of use
- User guide
- Frequent questions
- Glossary & definitions