Stats for family Trochilidae
Species in family:
| Stats for total mtDNA (group size: 1 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Archilochus colubris | 45.5 | 54.5 | 5114 | 2326 | 3903 | 5009 | 9.1 |
| Stats for total protein-coding genes (group size: 1 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Archilochus colubris | 46.1 | 53.9 | 3794 | 1449 | 2745 | 3386 | 9.1 |
| Stats for D-loop (group size: 0 species) | |||||||
|---|---|---|---|---|---|---|---|
| There is no data for D-loop in this group. |
| Stats for total tRNA-coding genes (group size: 1 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Archilochus colubris | 42.3 | 57.5 | 396 | 260 | 379 | 511 | 9.1 |
| Stats for total rRNA-coding genes (group size: 1 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Archilochus colubris | 45.8 | 54.2 | 676 | 493 | 532 | 852 | 9.1 |
| Stats for ATP6 (group size: 1 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Archilochus colubris | 45.2 | 54.8 | 238 | 71 | 176 | 199 | 9.1 |
| Stats for ATP8 (group size: 1 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Archilochus colubris | 38.0 | 62.0 | 56 | 9 | 41 | 65 | 9.1 |
| Stats for COX1 (group size: 1 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Archilochus colubris | 46.6 | 53.4 | 463 | 259 | 407 | 422 | 9.1 |
| Stats for COX2 (group size: 1 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Archilochus colubris | 45.0 | 55.0 | 204 | 104 | 163 | 213 | 9.1 |
| Stats for COX3 (group size: 1 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Archilochus colubris | 50.3 | 49.7 | 269 | 125 | 180 | 210 | 9.1 |
| Stats for CYTB (group size: 1 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Archilochus colubris | 45.7 | 54.3 | 378 | 144 | 293 | 328 | 9.1 |
| Stats for ND1 (group size: 1 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Archilochus colubris | 46.7 | 53.3 | 322 | 135 | 267 | 254 | 9.1 |
| Stats for ND2 (group size: 1 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Archilochus colubris | 44.9 | 55.1 | 359 | 108 | 251 | 322 | 9.1 |
| Stats for ND3 (group size: 1 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Archilochus colubris | 44.3 | 55.7 | 113 | 43 | 99 | 97 | 9.1 |
| Stats for ND4 (group size: 1 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Archilochus colubris | 47.6 | 52.4 | 504 | 148 | 312 | 407 | 9.1 |
| Stats for ND4L (group size: 1 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Archilochus colubris | 47.8 | 52.2 | 102 | 40 | 70 | 85 | 9.1 |
| Stats for ND5 (group size: 1 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Archilochus colubris | 44.7 | 55.3 | 605 | 206 | 420 | 584 | 9.1 |
| Stats for ND6 (group size: 1 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Archilochus colubris | 46.6 | 53.4 | 184 | 59 | 70 | 209 | 9.1 |
| Stats for 12S rRNA gene (group size: 1 species) | |||||||
|---|---|---|---|---|---|---|---|
| Species | GC (%) | AT (%) | G (bases) | C (bases) | A (bases) | T (bases) | Maximum lifespan (yrs) |
| Archilochus colubris | 47.4 | 52.6 | 269 | 191 | 189 | 321 | 9.1 |
| Stats for 16S rRNA gene (group size: 0 species) | |||||||
|---|---|---|---|---|---|---|---|
| There is no data for 16S rRNA gene in this group. |
Contact: Vadim E. Fraifeld, MD, PhD
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
Head: Lab for the Biology of Aging, The Shraga Segal Department of Microbiology, Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev
P.O. Box 653, Beer-Sheva 8410501, Israel
Email:
- How to cite us:
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If you would like to cite this database please use:
Toren D, Barzilay T, Tacutu R, Lehmann G, Muradian KK, Fraifeld VE. MitoAge: a database for comparative analysis of mitochondrial DNA, with a special focus on animal longevity. Nucleic Acids Res. 2016; 44(D1):D1262-5.
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